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#HOW TO INSTALL COOT ON UBUNTU FROM BINARY HOW TO#
#HOW TO INSTALL COOT ON UBUNTU FROM BINARY 64 BIT#
#HOW TO INSTALL COOT ON UBUNTU FROM BINARY FREE#

#HOW TO INSTALL COOT ON UBUNTU FROM BINARY HOW TO#

Look up how to install the missing dependency in this case sudo apt-get install lib32z1-dev installs the required library.

#HOW TO INSTALL COOT ON UBUNTU FROM BINARY 64 BIT#

If you get an error like /usr/bin/ld: cannot find -lz, SCons may be looking for 32 bit libraries on a 64 bit machine. To use an alternate version of the compiler, you can use the option cxx_ver option with whatever version you have (here 4.5):įor more build options, such as only compiling only one executable or apbs - Please take a look at the SConstruct File in main/source To use an alternate compiler, such as CLang, use the cxx option: These settings are described on the scons gofast page.īy default, scons uses GCC to compile. Add the follow lines to the project's root SConscript file:

In order to improve build times disable file hashing and allow caching of build dependency metadata. a NFS or GPFS filesystem) this causes ridiculously slow build times. rosetta) and filesystem with high io latency (e.g. Be aware that setting -j to a very high value will cause the operating system to have difficulty scheduling jobs.īy default scons hashes and processes every file in the tree before performing a build.

#HOW TO INSTALL COOT ON UBUNTU FROM BINARY FREE#

The -j8 flag would mean, "use at most 8 processes for building," and can be reasonably set as the number of free processors on your machine. scons.py -j mode=release bin/rosetta_scripts.linuxgccrelease scons.py -j bin/rosetta_scripts.linuxgccdebug If you specify the path with bin/ you must also pass the correct extension:

scons.py -j mode=release extras=hdf5 rosetta_scripts Release mode - faster/tested and ready to go &mdashl mode=release

Debug mode - for development - no mode option, or mode=debug.

Rosetta 3 can be compiled in two major modes: You can build either only the core libraries or both the libraries and the executables. You have multiple options for compiling Rosetta 3 with SCons. scons.py is implemented as a Python script. The current build system is based on the tool SCons ("Software Constructor") with some extensions. See the TACC page for more details.Īlternative Setup for Individual Workstations

As part of the XSEDE initiative, the TACC/Stampede cluster has Rosetta and PyRosetta centrally installed for authorized users.Publicly accessible clusters with Rosetta pre-installed Build Rosetta using the Rosetta Xcode Project (Mac)īuild environment setup instructions for most situations can be found on the Getting Started page.Alternative Setup for Individual Workstations.Publicly accessible clusters with Rosetta pre-installed.